Variant report

Variant	rs17841163
Chromosome Location	chr15:83569612-83569613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12101624	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1588546	0.96[ASN][1000 genomes]
rs17158168	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17158194	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17841162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127648	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306428	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3784365	0.92[ASN][1000 genomes]
rs3784366	0.92[ASN][1000 genomes]
rs56686717	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7174216	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7174726	0.92[ASN][1000 genomes]
rs8030940	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522673	chr15:83565711-83570114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
2	chr15:83559600-83570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:83560400-83570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:83564400-83569800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:83567600-83570000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:83567800-83570400	Enhancers	Psoas Muscle	Psoas
7	chr15:83568200-83569800	Weak transcription	Left Ventricle	heart
8	chr15:83568200-83569800	Weak transcription	Right Ventricle	heart
9	chr15:83568200-83570800	Enhancers	Pancreas	Pancrea
10	chr15:83568200-83585400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:83569200-83570200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:83569200-83570400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr15:83569200-83571600	Enhancers	Liver	Liver
14	chr15:83569400-83569800	Enhancers	HSMM	muscle
15	chr15:83569400-83570400	Enhancers	HSMMtube	muscle
16	chr15:83569400-83570600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr15:83569400-83571000	Enhancers	HepG2	liver
18	chr15:83569600-83569800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:83569600-83569800	Enhancers	Fetal Muscle Leg	muscle
20	chr15:83569600-83570000	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:83569600-83570000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:83569600-83570800	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links