Variant report

Variant	rs7174216
Chromosome Location	chr15:83569422-83569423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:83569369-83569443	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
HOMER2	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12101624	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1588546	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17158168	0.94[ASN][1000 genomes]
rs17158194	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17841162	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17841163	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2127648	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306428	0.92[EUR][1000 genomes]
rs3784365	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3784366	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs56686717	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7174726	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8030940	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522673	chr15:83565711-83570114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
2	chr15:83558400-83569600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:83559600-83570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:83560400-83570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:83564400-83569600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83564400-83569800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:83566800-83569600	Weak transcription	Gastric	stomach
8	chr15:83567600-83570000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:83567800-83570400	Enhancers	Psoas Muscle	Psoas
10	chr15:83568200-83569600	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:83568200-83569800	Weak transcription	Left Ventricle	heart
12	chr15:83568200-83569800	Weak transcription	Right Ventricle	heart
13	chr15:83568200-83570800	Enhancers	Pancreas	Pancrea
14	chr15:83568200-83585400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:83569200-83570200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:83569200-83570400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr15:83569200-83571600	Enhancers	Liver	Liver
18	chr15:83569400-83569600	Enhancers	Brain Hippocampus Middle	brain
19	chr15:83569400-83569800	Enhancers	HSMM	muscle
20	chr15:83569400-83570400	Enhancers	HSMMtube	muscle
21	chr15:83569400-83570600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:83569400-83571000	Enhancers	HepG2	liver

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