Variant report

Variant	rs17166181
Chromosome Location	chr5:97940869-97940870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10515277	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17132943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17132960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17165383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166102	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17166186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17842413	0.85[AFR][1000 genomes]
rs3905909	0.83[AMR][1000 genomes]
rs3909492	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6860595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865922	0.83[AMR][1000 genomes]
rs6881459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891350	0.83[AMR][1000 genomes]
rs6892978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7703206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732224	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv508372	chr5:97931331-97948860	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97939800-97941000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:97939800-97941200	Enhancers	NHDF-Ad	bronchial
3	chr5:97939800-97942000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:97940000-97941000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:97940000-97941000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:97940000-97941000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:97940000-97941200	Enhancers	Osteobl	bone
8	chr5:97940000-97942000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:97940000-97942200	Enhancers	Fetal Intestine Small	intestine
10	chr5:97940000-97943000	Enhancers	Fetal Intestine Large	intestine
11	chr5:97940200-97941000	Enhancers	NHLF	lung
12	chr5:97940200-97941200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:97940200-97941200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:97940200-97941400	Enhancers	NH-A	brain
15	chr5:97940400-97941000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:97940400-97941000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:97940400-97941000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:97940400-97941000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:97940600-97941000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:97940600-97941000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr5:97940600-97941600	Enhancers	HSMMtube	muscle
22	chr5:97940600-97949200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:97940800-97941000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr5:97940800-97941000	Enhancers	HUES48 Cell Line	embryonic stem cell

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