Variant report

Variant	rs17168743
Chromosome Location	chr7:136342489-136342490
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10215129	1.00[ASN][1000 genomes]
rs10216139	1.00[ASN][1000 genomes]
rs10235715	1.00[ASN][1000 genomes]
rs10244209	1.00[ASN][1000 genomes]
rs10249076	1.00[ASN][1000 genomes]
rs10254450	1.00[ASN][1000 genomes]
rs10268557	1.00[ASN][1000 genomes]
rs10269811	1.00[ASN][1000 genomes]
rs10275579	1.00[ASN][1000 genomes]
rs10488626	1.00[ASN][1000 genomes]
rs1425157	1.00[ASN][1000 genomes]
rs28445653	1.00[ASN][1000 genomes]
rs28687373	1.00[ASN][1000 genomes]
rs56349320	1.00[ASN][1000 genomes]
rs7778136	1.00[ASN][1000 genomes]
rs7790740	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809833	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136341400-136342800	Enhancers	Colon Smooth Muscle	Colon
2	chr7:136341600-136343000	Enhancers	Fetal Stomach	stomach
3	chr7:136341600-136343000	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:136342200-136342600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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