Variant report
| Variant | rs10249076 |
|---|---|
| Chromosome Location | chr7:136368796-136368797 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10215129 | 1.00[ASN][1000 genomes] |
| rs10216139 | 1.00[ASN][1000 genomes] |
| rs10235715 | 1.00[ASN][1000 genomes] |
| rs10244209 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10254450 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10268557 | 1.00[ASN][1000 genomes] |
| rs10269811 | 1.00[ASN][1000 genomes] |
| rs10275579 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10488626 | 1.00[ASN][1000 genomes] |
| rs1425157 | 1.00[ASN][1000 genomes] |
| rs17168743 | 1.00[ASN][1000 genomes] |
| rs28445653 | 1.00[ASN][1000 genomes] |
| rs28687373 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4433091 | 0.92[AMR][1000 genomes] |
| rs56349320 | 1.00[ASN][1000 genomes] |
| rs73727424 | 0.81[AMR][1000 genomes] |
| rs7778136 | 1.00[ASN][1000 genomes] |
| rs7790740 | 1.00[ASN][1000 genomes] |
| rs7809833 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518439 | chr7:136134265-136452082 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv508484 | chr7:136333249-136384790 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv3339283 | chr7:136367812-136369960 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | esv3437766 | chr7:136368362-136369460 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:136367400-136370200 | Weak transcription | Brain Germinal Matrix | brain |
