Variant report

Variant	rs4433091
Chromosome Location	chr7:136373808-136373809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10215129	0.92[EUR][1000 genomes]
rs10216139	0.92[EUR][1000 genomes]
rs10235715	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10244209	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10249076	0.92[AMR][1000 genomes]
rs10254450	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10268557	0.83[EUR][1000 genomes]
rs10269811	0.92[EUR][1000 genomes]
rs10275579	0.87[AFR][1000 genomes]
rs28445653	0.85[EUR][1000 genomes]
rs28687373	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73727424	0.88[AMR][1000 genomes]
rs7778136	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4433091	ST3GAL6	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136370800-136377000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:136371000-136376000	Weak transcription	Brain Germinal Matrix	brain
3	chr7:136373600-136374000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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