Variant report

Variant	rs10254450
Chromosome Location	chr7:136363340-136363341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10215129	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216139	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235715	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244209	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249076	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10268557	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269811	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275579	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488626	1.00[ASN][1000 genomes]
rs1425157	1.00[ASN][1000 genomes]
rs17168743	1.00[ASN][1000 genomes]
rs28445653	1.00[ASN][1000 genomes]
rs28687373	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433091	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56349320	1.00[ASN][1000 genomes]
rs73727424	0.88[AMR][1000 genomes]
rs7778136	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790740	1.00[ASN][1000 genomes]
rs7809833	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136361800-136363400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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