Variant report

Variant	rs10235715
Chromosome Location	chr7:136350740-136350741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10215129	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216139	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244209	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249076	1.00[ASN][1000 genomes]
rs10254450	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268557	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269811	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488626	1.00[ASN][1000 genomes]
rs1425157	1.00[ASN][1000 genomes]
rs17168743	1.00[ASN][1000 genomes]
rs28445653	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687373	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433091	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56349320	1.00[ASN][1000 genomes]
rs7778136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790740	1.00[ASN][1000 genomes]
rs7809833	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508484	chr7:136333249-136384790	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136348800-136351200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:136349000-136351200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:136349200-136351200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:136350200-136351000	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:136350600-136351200	Enhancers	Rectal Smooth Muscle	rectum
6	chr7:136350600-136351400	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links