Variant report

Variant	rs17185104
Chromosome Location	chr6:29758960-29758961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:29758234-29759061	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
2	SP1	chr6:29758248-29759060	HCT-116	colon:	n/a	n/a
3	FOSL1	chr6:29758318-29758980	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
4	FOSL1	chr6:29758249-29759360	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
5	FOS	chr6:29758430-29759272	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
6	CEBPB	chr6:29758960-29759205	Hela-S3	cervix:	n/a	n/a
7	SP1	chr6:29758289-29759050	HCT-116	colon:	n/a	n/a
8	FOS	chr6:29758431-29759264	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29755459..29758755-chr6:29758827..29760410,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP57-14	chr6:29758808-29760850	NONHSAT108552

Variant related genes	Relation type
HLA-V	TF binding region
ENSG00000181126	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs17178224	1.00[ASN][1000 genomes]
rs17179080	1.00[ASN][1000 genomes]
rs17184633	1.00[ASN][1000 genomes]
rs17185118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2535231	1.00[ASN][1000 genomes]
rs2535234	1.00[ASN][1000 genomes]
rs2535247	1.00[ASN][1000 genomes]
rs2535248	1.00[ASN][1000 genomes]
rs2535250	1.00[ASN][1000 genomes]
rs2535251	1.00[ASN][1000 genomes]
rs2535252	1.00[ASN][1000 genomes]
rs2535255	1.00[ASN][1000 genomes]
rs2535256	1.00[ASN][1000 genomes]
rs2535257	1.00[ASN][1000 genomes]
rs2535259	1.00[ASN][1000 genomes]
rs2747417	1.00[ASN][1000 genomes]
rs2747418	1.00[ASN][1000 genomes]
rs2747419	1.00[ASN][1000 genomes]
rs2747437	1.00[ASN][1000 genomes]
rs2747439	1.00[ASN][1000 genomes]
rs2747441	1.00[ASN][1000 genomes]
rs2747444	1.00[ASN][1000 genomes]
rs2747446	1.00[ASN][1000 genomes]
rs2747450	1.00[ASN][1000 genomes]
rs2747452	1.00[ASN][1000 genomes]
rs2747458	1.00[ASN][1000 genomes]
rs2747459	1.00[ASN][1000 genomes]
rs2747461	1.00[ASN][1000 genomes]
rs2747462	1.00[ASN][1000 genomes]
rs2747464	1.00[ASN][1000 genomes]
rs2747465	1.00[ASN][1000 genomes]
rs2747466	1.00[ASN][1000 genomes]
rs2857767	1.00[ASN][1000 genomes]
rs2857768	1.00[ASN][1000 genomes]
rs2857770	1.00[ASN][1000 genomes]
rs2857780	1.00[ASN][1000 genomes]
rs2857783	1.00[ASN][1000 genomes]
rs2857784	1.00[ASN][1000 genomes]
rs28733403	1.00[AFR][1000 genomes]
rs28764579	1.00[AFR][1000 genomes]
rs28764720	1.00[AFR][1000 genomes]
rs2907893	1.00[ASN][1000 genomes]
rs2907895	1.00[ASN][1000 genomes]
rs2907896	1.00[ASN][1000 genomes]
rs2982834	1.00[ASN][1000 genomes]
rs2982835	1.00[ASN][1000 genomes]
rs2982838	1.00[ASN][1000 genomes]
rs3117286	1.00[ASN][1000 genomes]
rs3117287	1.00[ASN][1000 genomes]
rs3117300	1.00[ASN][1000 genomes]
rs3117302	1.00[ASN][1000 genomes]
rs3117304	1.00[ASN][1000 genomes]
rs3117305	1.00[ASN][1000 genomes]
rs3117306	1.00[ASN][1000 genomes]
rs3117308	1.00[ASN][1000 genomes]
rs3117309	1.00[ASN][1000 genomes]
rs3117314	1.00[ASN][1000 genomes]
rs3117316	1.00[ASN][1000 genomes]
rs3129040	1.00[ASN][1000 genomes]
rs3129050	1.00[ASN][1000 genomes]
rs3129051	1.00[ASN][1000 genomes]
rs3129186	1.00[ASN][1000 genomes]
rs385743	1.00[ASN][1000 genomes]
rs387603	1.00[ASN][1000 genomes]
rs398931	1.00[ASN][1000 genomes]
rs406424	1.00[ASN][1000 genomes]
rs416560	1.00[ASN][1000 genomes]
rs422369	1.00[ASN][1000 genomes]
rs423281	1.00[ASN][1000 genomes]
rs423369	1.00[ASN][1000 genomes]
rs6899997	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923039	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938073	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938099	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741746	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745991	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9258251	1.00[ASN][1000 genomes]
rs9468579	1.00[ASN][1000 genomes]
rs9468581	1.00[ASN][1000 genomes]
rs9500953	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv883536	chr6:29746023-29760819	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv883537	chr6:29746023-29767611	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv883538	chr6:29748206-29760819	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv883539	chr6:29748206-29780529	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	esv3396224	chr6:29754243-29888093	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv965702	chr6:29758408-29798943	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29757400-29759000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:29758000-29759000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:29758400-29759000	Flanking Active TSS	HMEC	breast
4	chr6:29758400-29759400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:29758400-29760000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:29758600-29759000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:29758600-29759200	Flanking Active TSS	NHEK	skin
8	chr6:29758600-29759400	Enhancers	Esophagus	oesophagus
9	chr6:29758600-29759400	Enhancers	Pancreas	Pancrea
10	chr6:29758600-29759600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:29758600-29759800	Bivalent Enhancer	Stomach Mucosa	stomach
12	chr6:29758600-29760600	Active TSS	Placenta Amnion	Placenta Amnion
13	chr6:29758800-29759000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:29758800-29759600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr6:29758800-29759600	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:29758800-29759600	Flanking Active TSS	Hela-S3	cervix

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