Variant report

Variant rs2747417
Chromosome Location chr6:29629441-29629442
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:33 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29618400-29629600 Weak transcription Right Ventricle heart
2 chr6:29620000-29631200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr6:29623400-29630600 Active TSS Brain Anterior Caudate brain
4 chr6:29624400-29630400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr6:29624800-29631600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr6:29625000-29663600 Weak transcription Right Atrium heart
7 chr6:29626600-29631400 Weak transcription Fetal Heart heart
8 chr6:29627800-29629600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr6:29628000-29630200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr6:29628400-29630200 Active TSS Brain Hippocampus Middle brain
11 chr6:29628600-29631800 Enhancers iPS-15b Cell Line embryonic stem cell
12 chr6:29628600-29632000 Enhancers HUES48 Cell Line embryonic stem cell
13 chr6:29628800-29629600 Active TSS Brain Angular Gyrus brain
14 chr6:29628800-29629600 Active TSS Brain Cingulate Gyrus brain
15 chr6:29628800-29629600 Active TSS Brain Substantia Nigra brain
16 chr6:29628800-29631600 Enhancers iPS-18 Cell Line embryonic stem cell
17 chr6:29629000-29629600 Enhancers H9 Cell Line embryonic stem cell
18 chr6:29629000-29629600 Flanking Active TSS HUES64 Cell Line embryonic stem cell
19 chr6:29629000-29629600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr6:29629000-29629800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr6:29629000-29630000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
22 chr6:29629000-29630800 Enhancers NHEK skin
23 chr6:29629000-29632000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr6:29629200-29629600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr6:29629200-29630200 Weak transcription H1 Cell Line embryonic stem cell
26 chr6:29629200-29630200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr6:29629200-29630400 Enhancers HMEC breast
28 chr6:29629200-29631200 Weak transcription Brain Inferior Temporal Lobe brain
29 chr6:29629400-29629600 Enhancers ES-I3 Cell Line embryonic stem cell
30 chr6:29629400-29629600 Enhancers HUES6 Cell Line embryonic stem cell
31 chr6:29629400-29630000 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr6:29629400-29630000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr6:29629400-29630200 Active TSS iPS-20b Cell Line embryonic stem cell

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