Variant report

Variant rs3117286
Chromosome Location chr6:29629774-29629775
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29620000-29631200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr6:29623400-29630600 Active TSS Brain Anterior Caudate brain
3 chr6:29624400-29630400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr6:29624800-29631600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr6:29625000-29663600 Weak transcription Right Atrium heart
6 chr6:29626600-29631400 Weak transcription Fetal Heart heart
7 chr6:29628000-29630200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr6:29628400-29630200 Active TSS Brain Hippocampus Middle brain
9 chr6:29628600-29631800 Enhancers iPS-15b Cell Line embryonic stem cell
10 chr6:29628600-29632000 Enhancers HUES48 Cell Line embryonic stem cell
11 chr6:29628800-29631600 Enhancers iPS-18 Cell Line embryonic stem cell
12 chr6:29629000-29629800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr6:29629000-29630000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr6:29629000-29630800 Enhancers NHEK skin
15 chr6:29629000-29632000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr6:29629200-29630200 Weak transcription H1 Cell Line embryonic stem cell
17 chr6:29629200-29630200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr6:29629200-29630400 Enhancers HMEC breast
19 chr6:29629200-29631200 Weak transcription Brain Inferior Temporal Lobe brain
20 chr6:29629400-29630000 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr6:29629400-29630000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr6:29629400-29630200 Active TSS iPS-20b Cell Line embryonic stem cell
23 chr6:29629600-29629800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr6:29629600-29629800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr6:29629600-29629800 Bivalent Enhancer Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr6:29629600-29629800 Flanking Active TSS Brain Angular Gyrus brain
27 chr6:29629600-29629800 Flanking Active TSS Brain Cingulate Gyrus brain
28 chr6:29629600-29629800 Flanking Active TSS Brain Substantia Nigra brain
29 chr6:29629600-29630000 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr6:29629600-29630000 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr6:29629600-29630000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr6:29629600-29630400 Weak transcription H9 Cell Line embryonic stem cell
33 chr6:29629600-29630400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr6:29629600-29632000 Enhancers HUES64 Cell Line embryonic stem cell

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