Variant report

Variant rs17186468
Chromosome Location chr6:29934291-29934292
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29916800-29940200 Weak transcription Gastric stomach
2 chr6:29927800-29938800 Weak transcription Spleen Spleen
3 chr6:29932200-29934400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
4 chr6:29932200-29934400 Flanking Active TSS Primary B cells from cord blood blood
5 chr6:29932200-29934600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr6:29932200-29934600 Flanking Active TSS Muscle Satellite Cultured Cells --
7 chr6:29932200-29934600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
8 chr6:29932200-29934600 Flanking Active TSS Dnd41 blood
9 chr6:29932200-29934800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
10 chr6:29932200-29934800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
11 chr6:29932200-29934800 Enhancers Primary B cells from peripheral blood blood
12 chr6:29932200-29934800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
13 chr6:29932200-29935600 Enhancers Fetal Lung lung
14 chr6:29932200-29936200 Enhancers Fetal Intestine Small intestine
15 chr6:29932400-29934400 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr6:29932400-29934400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
17 chr6:29932400-29935000 Flanking Active TSS Duodenum Mucosa Duodenum
18 chr6:29932400-29935000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
19 chr6:29932600-29934400 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
20 chr6:29932600-29934400 Flanking Active TSS Brain Anterior Caudate brain
21 chr6:29932600-29934600 Flanking Active TSS Liver Liver
22 chr6:29932600-29934600 Active TSS Thymus Thymus
23 chr6:29932600-29935400 Active TSS Right Ventricle heart
24 chr6:29932600-29935600 Active TSS K562 blood
25 chr6:29932600-29935800 Enhancers Fetal Kidney kidney
26 chr6:29932800-29934400 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
27 chr6:29932800-29934400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
28 chr6:29932800-29934400 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
29 chr6:29932800-29934400 Active TSS Aorta Aorta
30 chr6:29933000-29934400 Flanking Active TSS Fetal Thymus thymus
31 chr6:29933000-29934600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr6:29933000-29934800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
33 chr6:29933200-29935400 Enhancers Fetal Intestine Large intestine
34 chr6:29933200-29936200 Enhancers H1 Cell Line embryonic stem cell
35 chr6:29933200-29936400 Enhancers Fetal Heart heart
36 chr6:29933200-29937400 Weak transcription Placenta Amnion Placenta Amnion
37 chr6:29933400-29934400 Flanking Active TSS GM12878-XiMat blood
38 chr6:29933400-29934600 Flanking Active TSS Rectal Smooth Muscle rectum
39 chr6:29933400-29937200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr6:29933600-29934400 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
41 chr6:29933600-29934400 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
42 chr6:29933600-29934800 Enhancers H9 Cell Line embryonic stem cell
43 chr6:29933600-29935800 Enhancers Cortex derived primary cultured neurospheres brain
44 chr6:29933600-29942400 Weak transcription Lung lung
45 chr6:29933800-29934400 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr6:29933800-29934800 Flanking Active TSS Duodenum Smooth Muscle Duodenum
47 chr6:29933800-29934800 Enhancers NH-A brain
48 chr6:29933800-29935000 Flanking Active TSS HepG2 liver
49 chr6:29933800-29936400 Enhancers Fetal Muscle Leg muscle
50 chr6:29933800-29936600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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