Variant report

Variant	rs17188846
Chromosome Location	chr1:211261821-211261822
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12735839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750065	0.89[ASN][1000 genomes]
rs12755446	0.89[ASN][1000 genomes]
rs12760898	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188839	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188881	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17267414	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267428	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17267442	1.00[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34247884	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34403324	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35035396	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35385507	0.89[ASN][1000 genomes]
rs35593738	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35664000	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714691	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35829564	0.86[ASN][1000 genomes]
rs35957403	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36005892	0.85[ASN][1000 genomes]
rs36115666	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762452	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3828159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4326688	0.89[ASN][1000 genomes]
rs4612687	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59200985	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6662529	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6679835	0.89[ASN][1000 genomes]
rs71638196	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71638198	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71638199	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512567	0.89[ASN][1000 genomes]
rs7512644	0.89[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211249400-211263600	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211250000-211271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211250400-211265000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:211256000-211263400	Strong transcription	HSMMtube	muscle
5	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:211256800-211276600	Weak transcription	Brain Angular Gyrus	brain
7	chr1:211256800-211277000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:211256800-211282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:211257800-211263800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:211260600-211264000	Strong transcription	HSMM	muscle
11	chr1:211261400-211262000	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:211261600-211262200	Enhancers	Pancreatic Islets	Pancreatic Islet

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