Variant report

Variant	rs4612687
Chromosome Location	chr1:211238860-211238861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12735839	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12750065	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12755446	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12760898	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17188839	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17188846	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17188881	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17267414	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17267421	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17267428	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17267442	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34247884	0.86[EUR][1000 genomes]
rs34403324	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35035396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35385507	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35593738	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35664000	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35714691	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35829564	0.89[ASN][1000 genomes]
rs35957403	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36005892	0.89[ASN][1000 genomes]
rs36115666	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3762452	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3828159	0.81[ASN][1000 genomes]
rs4326688	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59200985	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6662529	0.93[ASN][1000 genomes]
rs6679835	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71638196	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71638198	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71638199	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7512567	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7512644	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211224600-211242200	Weak transcription	A549	lung
2	chr1:211227400-211239000	Weak transcription	Fetal Brain Male	brain
3	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:211234600-211248400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:211236000-211248600	Strong transcription	HSMM	muscle
7	chr1:211236800-211248000	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:211237000-211240000	Weak transcription	HSMMtube	muscle
9	chr1:211237000-211241000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:211237200-211240400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:211237400-211240400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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