Variant report

Variant	rs17195897
Chromosome Location	chr13:94686937-94686938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1328824	1.00[ASN][1000 genomes]
rs1328825	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1328826	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16949432	0.83[EUR][1000 genomes]
rs17195890	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17195910	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195938	0.93[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17791623	0.87[EUR][1000 genomes]
rs17791629	0.87[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791641	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791647	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791660	0.93[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4773776	1.00[ASN][1000 genomes]
rs4773777	1.00[ASN][1000 genomes]
rs4773778	1.00[JPT][hapmap]
rs55790027	0.86[EUR][1000 genomes]
rs56151603	0.83[EUR][1000 genomes]
rs61962286	0.82[EUR][1000 genomes]
rs61962290	1.00[ASN][1000 genomes]
rs719224	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7982039	1.00[ASN][1000 genomes]
rs7990550	0.83[EUR][1000 genomes]
rs7999475	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8000456	0.85[EUR][1000 genomes]
rs9516340	1.00[ASN][1000 genomes]
rs9516341	1.00[ASN][1000 genomes]
rs9516342	1.00[ASN][1000 genomes]
rs9516343	1.00[ASN][1000 genomes]
rs9516344	1.00[ASN][1000 genomes]
rs9516345	1.00[ASN][1000 genomes]
rs9524321	1.00[ASN][1000 genomes]
rs9524324	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9524325	1.00[ASN][1000 genomes]
rs9589895	1.00[ASN][1000 genomes]
rs9589896	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9589897	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900923	chr13:94641894-94692925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94684400-94687000	Enhancers	Fetal Heart	heart
2	chr13:94685400-94687000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:94685400-94689200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:94685600-94687000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:94685800-94687000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:94685800-94688400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:94686200-94687000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:94686400-94687000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:94686400-94687000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr13:94686600-94687400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:94686800-94687800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr13:94686800-94692800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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