Variant report

Variant	rs17791660
Chromosome Location	chr13:94713628-94713629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11839797	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs11843004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1536777	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs1536778	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs1536779	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16949432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195890	0.86[CEU][hapmap]
rs17195897	0.93[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17195910	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17195938	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791623	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17791629	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17791641	0.93[CEU][hapmap];0.85[MEX][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17791647	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2183100	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2225231	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs55790027	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56151603	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57598130	0.84[ASN][1000 genomes]
rs61962286	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990550	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000456	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv933263	chr13:94711183-94897124	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94707000-94718000	Weak transcription	Fetal Kidney	kidney
2	chr13:94707600-94716800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:94709200-94715200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:94711800-94715200	Weak transcription	Ovary	ovary
5	chr13:94711800-94715400	Weak transcription	Fetal Lung	lung
6	chr13:94711800-94715600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:94713200-94714200	Enhancers	Rectal Smooth Muscle	rectum
8	chr13:94713200-94714600	Enhancers	Colon Smooth Muscle	Colon
9	chr13:94713400-94713800	Weak transcription	Fetal Brain Male	brain
10	chr13:94713400-94714600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:94713400-94714600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:94713400-94718200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:94713600-94714000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:94713600-94714000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:94713600-94714000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:94713600-94714000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:94713600-94714000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr13:94713600-94714000	Enhancers	HSMMtube	muscle
19	chr13:94713600-94714000	Enhancers	NHLF	lung
20	chr13:94713600-94714200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:94713600-94714200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr13:94713600-94714200	Enhancers	Fetal Stomach	stomach
23	chr13:94713600-94714200	Enhancers	Osteobl	bone
24	chr13:94713600-94714400	Enhancers	NHDF-Ad	bronchial
25	chr13:94713600-94716400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:94713600-94716400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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