Variant report

Variant	rs17791629
Chromosome Location	chr13:94701160-94701161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1328824	1.00[ASN][1000 genomes]
rs1328825	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1328826	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16949432	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17195890	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs17195897	0.87[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195910	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195938	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17791623	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17791641	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791647	0.94[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791660	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4773776	1.00[ASN][1000 genomes]
rs4773777	1.00[ASN][1000 genomes]
rs4773778	1.00[JPT][hapmap]
rs55790027	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56151603	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61962286	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61962290	1.00[ASN][1000 genomes]
rs719224	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7982039	1.00[ASN][1000 genomes]
rs7990550	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7999475	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8000456	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9516340	1.00[ASN][1000 genomes]
rs9516341	1.00[ASN][1000 genomes]
rs9516342	1.00[ASN][1000 genomes]
rs9516343	1.00[ASN][1000 genomes]
rs9516344	1.00[ASN][1000 genomes]
rs9516345	1.00[ASN][1000 genomes]
rs9524321	1.00[ASN][1000 genomes]
rs9524324	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9524325	1.00[ASN][1000 genomes]
rs9589895	1.00[ASN][1000 genomes]
rs9589896	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9589897	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94698800-94702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:94699400-94708600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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