Variant report

Variant	rs17203243
Chromosome Location	chr4:8516316-8516317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8514998..8517976-chr4:8524546..8527313,2	MCF-7	breast:
2	chr4:8515635..8517907-chr4:8527045..8528914,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1060617	0.80[EUR][1000 genomes]
rs1106591	0.91[AMR][1000 genomes]
rs13434465	0.82[AMR][1000 genomes]
rs16842352	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17194220	0.80[EUR][1000 genomes]
rs17201848	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17202499	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17203215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17806817	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17806883	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17807929	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17807994	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28507650	0.80[EUR][1000 genomes]
rs28664136	0.80[EUR][1000 genomes]
rs61739067	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62286002	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286003	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286005	0.80[EUR][1000 genomes]
rs62286035	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286036	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286037	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286038	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286040	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286041	0.80[EUR][1000 genomes]
rs62286042	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286043	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286044	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286047	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286049	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286050	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286052	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286053	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286054	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286055	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286056	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286058	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62286059	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287360	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287361	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287362	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287382	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287383	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287384	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287385	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287387	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287390	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287392	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287393	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287394	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287395	0.91[AMR][1000 genomes]
rs62287396	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287397	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287399	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287401	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287402	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287405	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287406	0.93[EUR][1000 genomes]
rs62287433	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287434	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287435	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287436	0.93[EUR][1000 genomes]
rs62287439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7686109	0.80[EUR][1000 genomes]
rs940132	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv878611	chr4:8512889-8534283	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8509000-8519200	Weak transcription	Brain Germinal Matrix	brain
2	chr4:8509400-8517200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:8511800-8517800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:8512200-8519200	Weak transcription	Spleen	Spleen
5	chr4:8512800-8517200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:8514200-8520200	Enhancers	HSMMtube	muscle
7	chr4:8514600-8516400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:8514600-8520000	Enhancers	Placenta	Placenta
9	chr4:8515600-8520400	Enhancers	NHDF-Ad	bronchial
10	chr4:8516000-8517200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:8516200-8517400	Enhancers	HSMM	muscle

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