Variant report

Variant	rs62287434
Chromosome Location	chr4:8497275-8497276
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8495654..8498484-chr4:8534530..8537327,2	MCF-7	breast:
2	chr4:8493970..8498267-chr4:8498833..8501951,5	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1060617	0.80[EUR][1000 genomes]
rs1106591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13434465	0.91[AMR][1000 genomes]
rs16842352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17194220	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17201848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17202499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17203215	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17203243	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17806817	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17806883	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17807929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17807994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28507650	0.80[EUR][1000 genomes]
rs28664136	0.80[EUR][1000 genomes]
rs61739067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62286002	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286003	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286005	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286035	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286036	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286037	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286038	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286040	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286041	0.80[EUR][1000 genomes]
rs62286042	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286043	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286044	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62286047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62286059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287391	1.00[AFR][1000 genomes]
rs62287392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287394	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62287396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287406	1.00[EUR][1000 genomes]
rs62287433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287435	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287436	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287439	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287440	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287441	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7686109	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs940132	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8473600-8501400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:8478000-8500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:8479200-8501400	Weak transcription	Liver	Liver
4	chr4:8480200-8498400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:8480200-8501400	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:8480600-8498200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:8480800-8497400	Weak transcription	Spleen	Spleen
8	chr4:8481400-8501400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:8481800-8497400	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:8482200-8501400	Weak transcription	Primary T cells from cord blood	blood
11	chr4:8491000-8497600	Weak transcription	Ovary	ovary
12	chr4:8491000-8501400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:8491000-8505200	Weak transcription	Fetal Brain Female	brain
14	chr4:8492000-8498800	Weak transcription	Fetal Stomach	stomach
15	chr4:8492000-8499600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:8495800-8501400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:8496000-8499400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:8496200-8501400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:8496400-8501200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:8496600-8497600	ZNF genes & repeats	Lung	lung
21	chr4:8496800-8498200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:8496800-8499400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr4:8497000-8497400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:8497000-8497400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:8497000-8498400	Enhancers	Placenta	Placenta
26	chr4:8497000-8504200	Weak transcription	Right Atrium	heart
27	chr4:8497200-8497400	Enhancers	K562	blood
28	chr4:8497200-8498800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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