Variant report

Variant	rs62286037
Chromosome Location	chr4:8402076-8402077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8401612..8405935-chr4:8442501..8444816,3	MCF-7	breast:
2	chr4:8401144..8403051-chr4:8405027..8406655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155275	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1060617	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1106591	0.91[AMR][1000 genomes]
rs13434465	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16842352	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17194220	1.00[EUR][1000 genomes]
rs17201848	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17202499	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17203215	0.82[AMR][1000 genomes]
rs17203243	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17806817	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17806883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17807929	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17807994	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28507650	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28664136	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61739067	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62286002	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286005	1.00[EUR][1000 genomes]
rs62286035	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286038	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286040	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286041	1.00[EUR][1000 genomes]
rs62286042	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286043	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286044	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62286047	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286049	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286050	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286052	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286053	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286054	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286055	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286056	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286058	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62286059	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287360	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287361	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287362	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62287382	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287383	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287384	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287385	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287387	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287390	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287392	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287393	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287394	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287395	0.91[AMR][1000 genomes]
rs62287396	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287397	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62287399	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62287401	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62287402	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62287405	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62287406	0.80[EUR][1000 genomes]
rs62287433	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62287434	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62287435	0.82[AMR][1000 genomes]
rs62287436	0.80[EUR][1000 genomes]
rs62287439	0.82[AMR][1000 genomes]
rs62287440	0.82[AMR][1000 genomes]
rs62287441	0.82[AMR][1000 genomes]
rs7686109	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940132	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv461220	chr4:8372944-8458394	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv593638	chr4:8372944-8458394	Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv878609	chr4:8373832-8407406	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv878610	chr4:8377058-8416976	ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv470014	chr4:8390646-8429817	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv593639	chr4:8394376-8424108	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8366400-8411600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:8383800-8419000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:8384800-8418600	Strong transcription	Primary T cells from cord blood	blood
4	chr4:8385200-8411600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:8385600-8407000	Weak transcription	Stomach Mucosa	stomach
6	chr4:8386400-8408400	Strong transcription	Fetal Intestine Large	intestine
7	chr4:8387400-8412000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:8389800-8411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:8391200-8406400	Weak transcription	Fetal Thymus	thymus
10	chr4:8394200-8407400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:8394800-8403200	Weak transcription	Psoas Muscle	Psoas
12	chr4:8394800-8409400	Weak transcription	Small Intestine	intestine
13	chr4:8395800-8411800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:8396400-8404800	Weak transcription	A549	lung
15	chr4:8396400-8405800	Weak transcription	GM12878-XiMat	blood
16	chr4:8396600-8404000	Weak transcription	HUVEC	blood vessel
17	chr4:8396600-8404400	Weak transcription	Fetal Kidney	kidney
18	chr4:8396600-8407200	Weak transcription	Dnd41	blood
19	chr4:8396600-8419400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:8396800-8403400	Weak transcription	Right Atrium	heart
21	chr4:8396800-8412400	Weak transcription	Fetal Brain Male	brain
22	chr4:8396800-8415600	Weak transcription	NH-A	brain
23	chr4:8397000-8406600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:8397600-8402400	Strong transcription	Placenta	Placenta
25	chr4:8397600-8402800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:8397600-8403600	Weak transcription	Fetal Heart	heart
27	chr4:8397600-8404400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr4:8397600-8404400	Weak transcription	Fetal Lung	lung
29	chr4:8397600-8409400	Weak transcription	HepG2	liver
30	chr4:8397600-8420400	Weak transcription	NHDF-Ad	bronchial
31	chr4:8397800-8403000	Strong transcription	Fetal Stomach	stomach
32	chr4:8397800-8406600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr4:8398000-8406000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:8398200-8409400	Weak transcription	Primary B cells from cord blood	blood
35	chr4:8399000-8407000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:8399200-8412000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr4:8399400-8411800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:8399400-8412000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:8399600-8403800	Weak transcription	HSMM	muscle
40	chr4:8399600-8406400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:8399600-8407200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr4:8399600-8407200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:8399600-8412000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:8399600-8429400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:8401000-8403200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:8401200-8403000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:8401200-8403800	Weak transcription	NHLF	lung
48	chr4:8401200-8405400	Weak transcription	Brain Anterior Caudate	brain
49	chr4:8401200-8406200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:8401400-8402200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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