Variant report

Variant	rs62287385
Chromosome Location	chr4:8461162-8461163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8459420..8461262-chr4:8464896..8467883,3	K562	blood:
2	chr4:8458147..8460116-chr4:8460485..8462982,2	MCF-7	breast:
3	chr4:8460137..8461781-chr4:8510827..8513622,2	K562	blood:
4	chr4:8459762..8461870-chr4:8464896..8467522,3	K562	blood:
5	chr4:8460049..8461557-chr4:8548208..8550640,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1060617	0.87[EUR][1000 genomes]
rs1106591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13434465	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16842352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17194220	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17201848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17202499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17203215	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17203243	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17806817	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17806883	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17807929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17807994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28507650	0.87[EUR][1000 genomes]
rs28664136	0.87[EUR][1000 genomes]
rs61739067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62286002	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286003	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286005	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286035	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286036	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286037	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286038	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286040	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286041	0.87[EUR][1000 genomes]
rs62286042	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286043	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286044	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62286047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62286058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62286059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287391	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62287392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62287393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62287397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287406	0.93[EUR][1000 genomes]
rs62287433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287435	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62287436	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62287439	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287440	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62287441	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7686109	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs940132	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8445200-8461400	Weak transcription	Hela-S3	cervix
2	chr4:8446400-8463200	Strong transcription	Stomach Smooth Muscle	stomach
3	chr4:8446400-8473800	Strong transcription	Fetal Stomach	stomach
4	chr4:8446600-8463600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:8446600-8463600	Strong transcription	Thymus	Thymus
6	chr4:8446600-8464600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:8446600-8473400	Strong transcription	Dnd41	blood
8	chr4:8446600-8474000	Strong transcription	Fetal Muscle Leg	muscle
9	chr4:8446800-8463800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:8447000-8461800	Strong transcription	Fetal Intestine Large	intestine
11	chr4:8447000-8464000	Strong transcription	Primary B cells from cord blood	blood
12	chr4:8447000-8474400	Strong transcription	Fetal Brain Female	brain
13	chr4:8447000-8475200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:8447000-8480200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:8447200-8464200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr4:8447200-8473000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:8447200-8480200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:8447400-8463600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:8447400-8474000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:8447400-8482200	Strong transcription	Primary T cells from cord blood	blood
21	chr4:8447600-8464000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:8447600-8472200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:8447600-8473400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:8447800-8461200	Strong transcription	Liver	Liver
25	chr4:8447800-8461800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:8447800-8463400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr4:8447800-8463400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:8447800-8463600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr4:8447800-8463800	Strong transcription	Brain Cingulate Gyrus	brain
30	chr4:8447800-8472800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:8448000-8461400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:8448000-8461600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr4:8448000-8461800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr4:8448000-8462000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:8448000-8463200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr4:8448000-8463600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr4:8448200-8463800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:8448200-8467400	Strong transcription	Adipose Nuclei	Adipose
39	chr4:8449000-8461600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:8449600-8461400	Strong transcription	Fetal Thymus	thymus
41	chr4:8449600-8463600	Strong transcription	Spleen	Spleen
42	chr4:8450800-8463600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:8451000-8463600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:8451200-8473600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:8451600-8461600	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr4:8452000-8463600	Strong transcription	Brain Anterior Caudate	brain
47	chr4:8452200-8461200	Strong transcription	Fetal Lung	lung
48	chr4:8452400-8461400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:8452400-8463600	Strong transcription	Brain Germinal Matrix	brain
50	chr4:8452600-8462000	Strong transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links