Variant report

Variant	rs17207897
Chromosome Location	chr10:61817480-61817481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11593500	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11593609	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11599164	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17208576	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17208611	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17802184	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17802208	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17802232	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2393610	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28932171	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4480489	0.86[EUR][1000 genomes]
rs72818480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72818490	0.86[AMR][1000 genomes]
rs7917800	0.83[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
3	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
4	chr10:61791600-61828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:61791800-61829400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
7	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
8	chr10:61793200-61819000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:61796000-61834800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:61797200-61819000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:61797200-61828200	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:61797600-61827600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:61800000-61819000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:61800800-61819000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:61801400-61818400	Weak transcription	K562	blood
17	chr10:61801800-61832600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:61802800-61828400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:61803000-61827800	Weak transcription	Fetal Kidney	kidney
20	chr10:61803600-61818800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:61803600-61835000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:61803800-61834200	Weak transcription	Brain Angular Gyrus	brain
23	chr10:61803800-61835000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:61804000-61819000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:61804000-61829800	Weak transcription	Fetal Stomach	stomach
26	chr10:61804000-61835000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:61804400-61819000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:61805000-61835400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:61805400-61834200	Weak transcription	Brain Anterior Caudate	brain
30	chr10:61805600-61827800	Weak transcription	Right Ventricle	heart
31	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
32	chr10:61806000-61818600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:61806000-61847800	Weak transcription	Fetal Lung	lung
34	chr10:61806200-61835000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:61808000-61833400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:61808400-61819200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:61808400-61834400	Weak transcription	Fetal Heart	heart
38	chr10:61808400-61835000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:61810400-61834800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:61811200-61827600	Weak transcription	Fetal Brain Male	brain
41	chr10:61812000-61819000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr10:61813200-61819600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:61813200-61820800	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:61813600-61834800	Weak transcription	Liver	Liver
45	chr10:61813600-61837600	Weak transcription	Lung	lung
46	chr10:61814000-61832600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:61814000-61833600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:61814200-61820800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:61814400-61848800	Weak transcription	Gastric	stomach
50	chr10:61814800-61821000	Strong transcription	Placenta	Placenta

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