Variant report

Variant	rs2393610
Chromosome Location	chr10:61820601-61820602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:61820474-61820937	HepG2	liver:	n/a	chr10:61820737-61820749
2	FOXA1	chr10:61820506-61820888	HepG2	liver:	n/a	chr10:61820737-61820749
3	FOXA2	chr10:61820551-61820859	HepG2	liver:	n/a	chr10:61820737-61820749
4	FOXA1	chr10:61820566-61820846	HepG2	liver:	n/a	chr10:61820737-61820749
5	FOXA1	chr10:61820561-61821004	HepG2	liver:	n/a	chr10:61820737-61820749

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61819835..61821346-chr10:61824898..61827091,2	MCF-7	breast:
2	chr10:61810823..61813906-chr10:61818082..61821174,3	K562	blood:

Variant related genes	Relation type
ANK3	TF binding region
ENSG00000151150	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509114	1.00[LWK][hapmap]
rs10509122	1.00[GIH][hapmap]
rs11593500	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11593609	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11599164	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17207897	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17208576	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17208611	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17802184	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17802208	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17802232	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2393595	1.00[GIH][hapmap]
rs28932171	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4480489	0.86[EUR][1000 genomes]
rs72818480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72818490	0.86[AMR][1000 genomes]
rs7917800	1.00[GIH][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
2	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
3	chr10:61791600-61828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:61791800-61829400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
6	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
7	chr10:61796000-61834800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:61797200-61828200	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:61797600-61827600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:61801800-61832600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:61802800-61828400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:61803000-61827800	Weak transcription	Fetal Kidney	kidney
14	chr10:61803600-61835000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:61803800-61834200	Weak transcription	Brain Angular Gyrus	brain
16	chr10:61803800-61835000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:61804000-61829800	Weak transcription	Fetal Stomach	stomach
18	chr10:61804000-61835000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:61805000-61835400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:61805400-61834200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:61805600-61827800	Weak transcription	Right Ventricle	heart
22	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
23	chr10:61806000-61847800	Weak transcription	Fetal Lung	lung
24	chr10:61806200-61835000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:61808000-61833400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:61808400-61834400	Weak transcription	Fetal Heart	heart
27	chr10:61808400-61835000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:61810400-61834800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:61811200-61827600	Weak transcription	Fetal Brain Male	brain
30	chr10:61813200-61820800	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:61813600-61834800	Weak transcription	Liver	Liver
32	chr10:61813600-61837600	Weak transcription	Lung	lung
33	chr10:61814000-61832600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:61814000-61833600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:61814200-61820800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:61814400-61848800	Weak transcription	Gastric	stomach
37	chr10:61814800-61821000	Strong transcription	Placenta	Placenta
38	chr10:61814800-61829600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:61815000-61834800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:61815000-61835200	Weak transcription	Ovary	ovary
41	chr10:61815200-61823000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:61815200-61828000	Weak transcription	HSMMtube	muscle
43	chr10:61815600-61827800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:61815800-61834200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:61815800-61835000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:61816000-61828400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:61816000-61834000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:61816600-61829800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:61817200-61834800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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