Variant report

Variant	rs2393595
Chromosome Location	chr10:61842498-61842499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61841369..61843322-chr10:62538233..62539979,2	K562	blood:

Variant related genes	Relation type
ENSG00000170312	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509122	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10821673	0.83[YRI][hapmap]
rs10994185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10994188	0.88[AFR][1000 genomes]
rs11593500	0.80[EUR][1000 genomes]
rs11593609	0.80[EUR][1000 genomes]
rs11596260	0.87[YRI][hapmap]
rs11599164	1.00[GIH][hapmap];0.86[MEX][hapmap]
rs17208576	1.00[GIH][hapmap];0.86[MEX][hapmap]
rs17208611	0.80[EUR][1000 genomes]
rs2393610	1.00[GIH][hapmap]
rs28932171	1.00[GIH][hapmap];0.86[MEX][hapmap]
rs41274682	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41274684	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56077689	0.94[AFR][1000 genomes]
rs56141826	0.94[AFR][1000 genomes]
rs7084246	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7098848	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72818490	0.99[EUR][1000 genomes]
rs7917800	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
2	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
3	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:61806000-61847800	Weak transcription	Fetal Lung	lung
6	chr10:61814400-61848800	Weak transcription	Gastric	stomach
7	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:61817600-61842600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:61818200-61848000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:61820800-61845600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:61824200-61856800	Weak transcription	NH-A	brain
13	chr10:61825000-61849000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:61828400-61859800	Weak transcription	Fetal Brain Male	brain
15	chr10:61829200-61847800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:61830000-61851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:61831000-61849200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:61832800-61848600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:61835000-61859600	Weak transcription	Brain Angular Gyrus	brain
21	chr10:61835200-61844800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:61835400-61845600	Weak transcription	K562	blood
23	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:61835600-61848600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
27	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
28	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:61836000-61845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:61836000-61845800	Weak transcription	Fetal Kidney	kidney
31	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
33	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
34	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:61836200-61842600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:61836200-61844200	Weak transcription	Primary T cells from cord blood	blood
37	chr10:61836200-61845800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:61836200-61846000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:61836200-61847600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:61836200-61847800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:61836200-61847800	Weak transcription	Fetal Intestine Small	intestine
42	chr10:61836200-61850000	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:61836200-61850800	Weak transcription	Esophagus	oesophagus
44	chr10:61836200-61851000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:61836200-61853400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:61836200-61864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
48	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
49	chr10:61836800-61845800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:61837200-61849400	Strong transcription	Placenta	Placenta

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