Variant report

Variant	rs11593500
Chromosome Location	chr10:61837429-61837430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61827414..61829879-chr10:61835437..61837522,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509122	0.80[EUR][1000 genomes]
rs10994185	0.80[EUR][1000 genomes]
rs11593609	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11599164	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17207897	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17208576	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17208611	0.88[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17802184	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17802208	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17802232	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2393595	0.80[EUR][1000 genomes]
rs2393610	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28932171	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41274682	0.80[EUR][1000 genomes]
rs41274684	0.80[EUR][1000 genomes]
rs4480489	0.83[EUR][1000 genomes]
rs7098848	0.80[EUR][1000 genomes]
rs72818480	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72818490	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7917800	0.84[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
2	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
3	chr10:61798200-61844400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:61806000-61847800	Weak transcription	Fetal Lung	lung
6	chr10:61813600-61837600	Weak transcription	Lung	lung
7	chr10:61814400-61848800	Weak transcription	Gastric	stomach
8	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:61817600-61842600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:61818200-61848000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:61820800-61845600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:61824200-61856800	Weak transcription	NH-A	brain
14	chr10:61825000-61849000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:61828400-61859800	Weak transcription	Fetal Brain Male	brain
16	chr10:61829200-61847800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:61830000-61851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:61830800-61838600	Weak transcription	Spleen	Spleen
19	chr10:61831000-61849200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:61832800-61848600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:61834000-61842400	Weak transcription	Aorta	Aorta
22	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:61834400-61838000	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:61835000-61859600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:61835200-61844800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:61835400-61837600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:61835400-61845600	Weak transcription	K562	blood
28	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:61835600-61839000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:61835600-61842000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:61835600-61848600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
35	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:61836000-61837800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:61836000-61839200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:61836000-61842200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:61836000-61842200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:61836000-61842400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:61836000-61842400	Weak transcription	Ovary	ovary
42	chr10:61836000-61845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:61836000-61845800	Weak transcription	Fetal Kidney	kidney
44	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
46	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
47	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr10:61836200-61837600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:61836200-61838200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:61836200-61838600	Weak transcription	Brain Inferior Temporal Lobe	brain

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