Variant report

Variant	rs17209757
Chromosome Location	chr21:17441645-17441646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11908760	1.00[ASN][1000 genomes]
rs11908950	1.00[ASN][1000 genomes]
rs11909717	1.00[ASN][1000 genomes]
rs11911225	1.00[ASN][1000 genomes]
rs11911677	1.00[ASN][1000 genomes]
rs17209792	1.00[ASN][1000 genomes]
rs2226728	1.00[ASN][1000 genomes]
rs2823625	1.00[ASN][1000 genomes]
rs7275630	1.00[ASN][1000 genomes]
rs7277202	1.00[ASN][1000 genomes]
rs7281053	1.00[ASN][1000 genomes]
rs7281143	1.00[ASN][1000 genomes]
rs73893210	1.00[ASN][1000 genomes]
rs9976726	1.00[ASN][1000 genomes]
rs9982261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913414	chr21:17383785-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv913415	chr21:17400916-17452276	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2830060	chr21:17400916-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv527854	chr21:17400916-17459507	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1851038	chr21:17412144-17488119	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17441400-17444000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr21:17441600-17441800	Active TSS	Brain Anterior Caudate	brain
3	chr21:17441600-17441800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr21:17441600-17442000	Enhancers	Brain Cingulate Gyrus	brain
5	chr21:17441600-17442000	Flanking Active TSS	Fetal Brain Male	brain
6	chr21:17441600-17442200	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr21:17441600-17442400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr21:17441600-17445000	Active TSS	Brain Germinal Matrix	brain
9	chr21:17441600-17446800	Active TSS	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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