Variant report

Variant	rs17209792
Chromosome Location	chr21:17539526-17539527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11908760	1.00[ASN][1000 genomes]
rs11908950	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11909717	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911225	1.00[ASN][1000 genomes]
rs11911677	1.00[ASN][1000 genomes]
rs17209757	1.00[ASN][1000 genomes]
rs2226728	1.00[ASN][1000 genomes]
rs2823625	0.82[GIH][hapmap];1.00[ASN][1000 genomes]
rs7275630	1.00[ASN][1000 genomes]
rs7277202	1.00[ASN][1000 genomes]
rs7281053	1.00[ASN][1000 genomes]
rs7281143	1.00[ASN][1000 genomes]
rs73893210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9976726	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9982261	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1065028	chr21:17522588-17572535	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17527200-17553000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr21:17529000-17540600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr21:17537200-17541400	Weak transcription	Brain Angular Gyrus	brain
4	chr21:17537600-17540600	Weak transcription	Brain Substantia Nigra	brain
5	chr21:17537600-17541600	Weak transcription	Brain Hippocampus Middle	brain
6	chr21:17538600-17540400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr21:17538600-17540600	Weak transcription	Brain Anterior Caudate	brain
8	chr21:17538600-17541000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr21:17538600-17541200	Weak transcription	Adipose Nuclei	Adipose
10	chr21:17538600-17541600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr21:17539000-17541600	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links