Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10854413	0.82[EUR][1000 genomes]
rs11908760	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11908950	1.00[ASN][1000 genomes]
rs11909717	1.00[ASN][1000 genomes]
rs11911225	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911677	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543773	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17209757	1.00[ASN][1000 genomes]
rs17209792	1.00[ASN][1000 genomes]
rs2187061	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2226728	1.00[ASN][1000 genomes]
rs239035	0.90[EUR][1000 genomes]
rs239036	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2823625	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823626	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2823627	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7275630	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7275690	0.87[EUR][1000 genomes]
rs7277202	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281053	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7283583	0.80[EUR][1000 genomes]
rs73893210	1.00[ASN][1000 genomes]
rs9976726	1.00[ASN][1000 genomes]
rs9982261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1065028	chr21:17522588-17572535	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17527200-17553000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr21:17542200-17548600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr21:17543200-17551200	Weak transcription	A549	lung
4	chr21:17543400-17552600	Weak transcription	Brain Anterior Caudate	brain
5	chr21:17543400-17553000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr21:17544600-17545000	Enhancers	Brain Cingulate Gyrus	brain

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