Variant report

Variant	rs17221752
Chromosome Location	chr3:46638103-46638104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11709309	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11713702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714288	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715694	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11716682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11719804	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11919651	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11929118	1.00[YRI][hapmap]
rs12639258	1.00[CHB][hapmap]
rs13327723	1.00[CHB][hapmap]
rs17221925	1.00[ASN][1000 genomes]
rs62248664	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62248667	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6441998	1.00[CHB][hapmap]
rs6768992	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792245	0.87[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644995	1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
2	chr3:46634800-46650800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:46635000-46640200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:46635000-46641400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:46635600-46640200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:46636000-46639600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:46637400-46640200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:46637600-46640200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:46637800-46639000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:46637800-46640200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:46637800-46640400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:46637800-46640400	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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