Variant report

Variant	rs17252340
Chromosome Location	chr13:66609880-66609881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:66606276..66609107-chr13:66609295..66610970,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1460656	0.88[EUR][1000 genomes]
rs17079324	0.88[EUR][1000 genomes]
rs17079370	0.88[EUR][1000 genomes]
rs17079376	0.88[EUR][1000 genomes]
rs17079412	0.88[EUR][1000 genomes]
rs17079419	0.88[EUR][1000 genomes]
rs17079434	0.88[EUR][1000 genomes]
rs17079454	0.88[EUR][1000 genomes]
rs17079457	0.88[EUR][1000 genomes]
rs17079459	0.88[EUR][1000 genomes]
rs17079466	0.88[EUR][1000 genomes]
rs17080823	0.88[ASN][1000 genomes]
rs17252228	1.00[EUR][1000 genomes]
rs17252256	1.00[EUR][1000 genomes]
rs17252263	1.00[EUR][1000 genomes]
rs17252333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252389	0.97[ASN][1000 genomes]
rs17837220	1.00[EUR][1000 genomes]
rs17837227	1.00[EUR][1000 genomes]
rs17837228	1.00[EUR][1000 genomes]
rs17837241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837242	0.97[ASN][1000 genomes]
rs56384846	0.88[EUR][1000 genomes]
rs56712091	0.88[EUR][1000 genomes]
rs57754232	1.00[EUR][1000 genomes]
rs57947627	0.88[EUR][1000 genomes]
rs58566648	0.82[ASN][1000 genomes]
rs59013848	1.00[EUR][1000 genomes]
rs59849551	0.82[ASN][1000 genomes]
rs59894521	1.00[EUR][1000 genomes]
rs60289024	0.90[ASN][1000 genomes]
rs60541953	1.00[EUR][1000 genomes]
rs60637826	0.88[EUR][1000 genomes]
rs61001782	0.88[EUR][1000 genomes]
rs61216956	1.00[EUR][1000 genomes]
rs61453947	0.88[EUR][1000 genomes]
rs73506819	0.88[EUR][1000 genomes]
rs73506822	0.88[EUR][1000 genomes]
rs73506823	0.88[EUR][1000 genomes]
rs73506825	0.88[EUR][1000 genomes]
rs73506827	0.88[EUR][1000 genomes]
rs74091825	0.88[EUR][1000 genomes]
rs74091828	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047991	chr13:65982529-66931617	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv900385	chr13:66492872-66611146	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
10	nsv428603	chr13:66517170-66677184	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
11	nsv915828	chr13:66544825-67212201	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66608400-66610400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:66608600-66610000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:66608600-66610200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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