Variant report

Variant	rs17258106
Chromosome Location	chr4:119675406-119675407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10001115	0.88[EUR][1000 genomes]
rs10018977	0.88[EUR][1000 genomes]
rs10019311	0.88[EUR][1000 genomes]
rs10025640	0.88[EUR][1000 genomes]
rs11098451	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs11931194	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11938970	1.00[CEU][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17257039	0.92[CEU][hapmap];1.00[AFR][1000 genomes]
rs17257945	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17258050	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17258830	0.92[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17258907	0.80[CEU][hapmap]
rs17259173	0.86[EUR][1000 genomes]
rs17259284	0.88[EUR][1000 genomes]
rs17323012	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17323034	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17323877	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17324807	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs17324821	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs17324884	1.00[ASW][hapmap];0.92[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs17324968	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17325017	0.88[EUR][1000 genomes]
rs17325129	0.88[EUR][1000 genomes]
rs17325192	0.88[EUR][1000 genomes]
rs28595532	0.95[EUR][1000 genomes]
rs28600971	0.95[EUR][1000 genomes]
rs28627331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28797314	0.88[EUR][1000 genomes]
rs28837152	0.88[EUR][1000 genomes]
rs41455648	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41535748	1.00[ASW][hapmap]
rs55633605	0.88[EUR][1000 genomes]
rs55634130	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55640619	0.88[EUR][1000 genomes]
rs55649377	0.88[EUR][1000 genomes]
rs55668908	0.88[EUR][1000 genomes]
rs55671478	0.88[EUR][1000 genomes]
rs55704595	0.88[EUR][1000 genomes]
rs55726697	0.88[EUR][1000 genomes]
rs55744948	0.88[EUR][1000 genomes]
rs55758547	0.88[EUR][1000 genomes]
rs55794497	0.88[EUR][1000 genomes]
rs55806110	0.88[EUR][1000 genomes]
rs55823625	0.88[EUR][1000 genomes]
rs55869953	0.88[EUR][1000 genomes]
rs55901549	0.88[EUR][1000 genomes]
rs55913633	0.88[EUR][1000 genomes]
rs55985953	0.88[EUR][1000 genomes]
rs56000725	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56027489	0.88[EUR][1000 genomes]
rs56042726	0.82[EUR][1000 genomes]
rs56046449	0.88[EUR][1000 genomes]
rs56046676	0.88[EUR][1000 genomes]
rs56104443	0.88[EUR][1000 genomes]
rs56117870	0.84[EUR][1000 genomes]
rs56124677	0.88[EUR][1000 genomes]
rs56150431	0.88[EUR][1000 genomes]
rs56162974	0.88[EUR][1000 genomes]
rs56212415	0.88[EUR][1000 genomes]
rs56225646	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56227053	0.88[EUR][1000 genomes]
rs56252481	0.88[EUR][1000 genomes]
rs56264833	0.84[EUR][1000 genomes]
rs56283736	0.88[EUR][1000 genomes]
rs56291421	0.88[EUR][1000 genomes]
rs56302493	0.88[EUR][1000 genomes]
rs56302600	0.88[EUR][1000 genomes]
rs56303276	0.88[EUR][1000 genomes]
rs56309519	0.88[EUR][1000 genomes]
rs56322132	0.88[EUR][1000 genomes]
rs56331118	0.88[EUR][1000 genomes]
rs56342843	0.88[EUR][1000 genomes]
rs56359736	0.88[EUR][1000 genomes]
rs56364904	0.88[EUR][1000 genomes]
rs56388366	0.88[EUR][1000 genomes]
rs56389935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56762141	0.88[EUR][1000 genomes]
rs6818519	0.88[EUR][1000 genomes]
rs73842212	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73842253	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119607800-119693800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:119625800-119718000	Weak transcription	Hela-S3	cervix
3	chr4:119640800-119692600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:119641600-119679800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr4:119649200-119687600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:119649200-119693600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:119651800-119687400	Weak transcription	Thymus	Thymus
8	chr4:119654400-119687400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:119654800-119676000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:119659600-119690400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:119660400-119688200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:119660400-119689800	Weak transcription	Brain Angular Gyrus	brain
13	chr4:119661800-119684600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:119662000-119677400	Weak transcription	Fetal Kidney	kidney
15	chr4:119662000-119687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:119662000-119694400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr4:119665200-119687600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:119665600-119678000	Weak transcription	Esophagus	oesophagus
19	chr4:119665800-119687400	Weak transcription	Spleen	Spleen
20	chr4:119668000-119683600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:119668000-119689800	Weak transcription	Brain Germinal Matrix	brain
22	chr4:119668200-119678200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:119668200-119684000	Weak transcription	K562	blood
24	chr4:119668200-119690200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:119668400-119678400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:119669400-119677000	Weak transcription	Fetal Intestine Small	intestine
27	chr4:119669400-119679000	Strong transcription	GM12878-XiMat	blood
28	chr4:119669800-119676000	Strong transcription	Duodenum Mucosa	Duodenum
29	chr4:119669800-119676000	Strong transcription	HepG2	liver
30	chr4:119669800-119676400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:119671400-119682800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:119672000-119678200	Weak transcription	HMEC	breast
33	chr4:119672400-119676200	Genic enhancers	Osteobl	bone
34	chr4:119672400-119680400	Genic enhancers	NHDF-Ad	bronchial
35	chr4:119672800-119681200	Enhancers	Rectal Smooth Muscle	rectum
36	chr4:119672800-119681400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:119673000-119675600	Weak transcription	Gastric	stomach
38	chr4:119673000-119677600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:119673000-119681000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr4:119673000-119687400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr4:119673000-119687400	Weak transcription	Pancreas	Pancrea
42	chr4:119673200-119676400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:119673200-119677000	Weak transcription	Fetal Heart	heart
44	chr4:119673200-119677600	Weak transcription	Primary T cells from cord blood	blood
45	chr4:119673200-119677600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:119673200-119677600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr4:119673200-119677600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr4:119673200-119678200	Weak transcription	Lung	lung
49	chr4:119673200-119680600	Weak transcription	Primary B cells from cord blood	blood
50	chr4:119673200-119682200	Weak transcription	Primary hematopoietic stem cells	blood

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