Variant report

Variant	rs56342843
Chromosome Location	chr4:119765070-119765071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119756355..119759548-chr4:119764627..119767405,3	K562	blood:
2	chr4:119764467..119766510-chr4:119790526..119793224,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10001115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10019311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11098451	0.93[EUR][1000 genomes]
rs17257945	0.88[EUR][1000 genomes]
rs17258106	0.88[EUR][1000 genomes]
rs17258830	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17258907	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17259173	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17259257	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17259284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17324807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17324821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17324884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17324968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17325017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17325129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17325192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28595532	0.93[EUR][1000 genomes]
rs28600971	0.93[EUR][1000 genomes]
rs28627331	0.88[EUR][1000 genomes]
rs28797314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28837152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41455648	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55633605	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55640619	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55649377	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55668908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671478	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55704595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55726697	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55744948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55758547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55794497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55806110	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55823625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55869953	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55913633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55985953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56027489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56042726	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56046449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56046676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56055826	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56104443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56117870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56124677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56150431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56162974	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56212415	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56227053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252481	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56264833	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56283736	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56291421	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56302493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56302600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56303276	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56309519	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56322132	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56359736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56364904	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56388366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56389935	0.88[EUR][1000 genomes]
rs56762141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6818519	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73842253	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119758200-119766800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:119758200-119771200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:119762800-119771400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:119763000-119766800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:119763000-119767400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:119763000-119767600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:119763000-119769800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:119763200-119766800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:119763200-119767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:119763200-119769600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:119763400-119768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:119764000-119766000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:119764000-119771000	Weak transcription	NHDF-Ad	bronchial
14	chr4:119764000-119771200	Weak transcription	NHEK	skin
15	chr4:119764000-119771200	Weak transcription	Osteobl	bone
16	chr4:119764000-119771600	Weak transcription	HSMM	muscle
17	chr4:119764800-119768200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:119764800-119771400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:119764800-119771600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:119764800-119771800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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