Variant report

Variant	rs17259173
Chromosome Location	chr4:119777232-119777233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119773597..119776593-chr4:119776997..119778695,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10001115	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10018977	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10019311	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10025640	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11098451	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs11938970	0.92[CEU][hapmap]
rs17257039	0.83[CEU][hapmap]
rs17257945	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs17258050	0.83[CEU][hapmap]
rs17258106	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs17258830	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17258907	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17259257	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17259284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17323012	0.92[CEU][hapmap]
rs17323034	0.83[CEU][hapmap]
rs17323877	0.83[CEU][hapmap]
rs17324807	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17324821	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17324884	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17324968	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17325017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17325129	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17325192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28595532	0.91[EUR][1000 genomes]
rs28600971	0.91[EUR][1000 genomes]
rs28627331	0.86[EUR][1000 genomes]
rs28797314	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28837152	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41455648	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55633605	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55640619	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55649377	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55668908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55671478	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55704595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55726697	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55744948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55758547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55794497	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55806110	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55823625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55869953	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55901549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55913633	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55985953	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56027489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56042726	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56046449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56046676	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56055826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56104443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56117870	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56124677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56144225	1.00[AFR][1000 genomes]
rs56150431	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56162974	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56212415	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56227053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56252481	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56264833	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56283736	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56291421	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56302493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56302600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56303276	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56309519	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56322132	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56331118	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56342843	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56359736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56364904	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56388366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56389935	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs56762141	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6818519	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73842253	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119772400-119779200	Weak transcription	Ovary	ovary
2	chr4:119772400-119788200	Weak transcription	NHDF-Ad	bronchial
3	chr4:119775600-119777600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:119775600-119778200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:119776600-119781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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