Variant report

Variant	rs17294229
Chromosome Location	chr15:83569735-83569736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1021022	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12385947	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1256424	0.92[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1256426	0.90[YRI][hapmap]
rs1256428	0.81[CEU][hapmap];0.84[JPT][hapmap]
rs1256436	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1256438	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256439	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256440	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256441	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256442	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256443	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256444	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256445	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1256446	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256447	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256448	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256449	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256450	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256454	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2251275	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2621226	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2667377	0.96[CEU][hapmap];0.94[YRI][hapmap]
rs2667378	0.92[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2667379	0.92[CEU][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2667380	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2667384	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784377	1.00[YRI][hapmap]
rs55633961	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6603035	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7173264	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7173683	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs750234	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs8031927	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8036957	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs880289	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs899746	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522673	chr15:83565711-83570114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
2	chr15:83559600-83570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:83560400-83570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:83564400-83569800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:83567600-83570000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:83567800-83570400	Enhancers	Psoas Muscle	Psoas
7	chr15:83568200-83569800	Weak transcription	Left Ventricle	heart
8	chr15:83568200-83569800	Weak transcription	Right Ventricle	heart
9	chr15:83568200-83570800	Enhancers	Pancreas	Pancrea
10	chr15:83568200-83585400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:83569200-83570200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:83569200-83570400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr15:83569200-83571600	Enhancers	Liver	Liver
14	chr15:83569400-83569800	Enhancers	HSMM	muscle
15	chr15:83569400-83570400	Enhancers	HSMMtube	muscle
16	chr15:83569400-83570600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr15:83569400-83571000	Enhancers	HepG2	liver
18	chr15:83569600-83569800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:83569600-83569800	Enhancers	Fetal Muscle Leg	muscle
20	chr15:83569600-83570000	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:83569600-83570000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:83569600-83570800	Enhancers	Gastric	stomach

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