Variant report

Variant	rs2621226
Chromosome Location	chr15:83545425-83545426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83543732..83546327-chr15:83548068..83551024,3	K562	blood:
2	chr15:83545265..83547067-chr15:83547824..83550376,2	MCF-7	breast:
3	chr15:83540274..83544098-chr15:83544468..83546572,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1021022	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12385947	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1256424	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1256428	0.81[CEU][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap]
rs1256436	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1256438	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256439	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256440	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256441	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256442	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256443	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256444	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256445	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256446	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256447	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256448	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256449	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256450	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1256454	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17294229	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2251275	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2667377	1.00[CEU][hapmap]
rs2667378	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2667379	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2667380	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2667384	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55633961	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6603035	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7173264	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7173683	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs750234	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs8031927	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8036957	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs880289	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83504600-83549400	Weak transcription	Psoas Muscle	Psoas
2	chr15:83520000-83549800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:83520000-83563800	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:83520200-83547000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:83523600-83558000	Weak transcription	Esophagus	oesophagus
6	chr15:83524600-83567800	Weak transcription	Left Ventricle	heart
7	chr15:83524800-83563800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:83537000-83551400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:83538000-83549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
11	chr15:83540800-83563600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:83541000-83566200	Weak transcription	Spleen	Spleen
13	chr15:83541200-83545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:83542400-83551000	Weak transcription	Right Ventricle	heart
15	chr15:83542400-83564000	Weak transcription	Lung	lung
16	chr15:83542400-83567200	Weak transcription	Brain Angular Gyrus	brain
17	chr15:83542800-83558000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:83543000-83557600	Weak transcription	Fetal Stomach	stomach
19	chr15:83543600-83557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:83543600-83558000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:83543600-83567600	Weak transcription	Aorta	Aorta
22	chr15:83544000-83550800	Weak transcription	Gastric	stomach
23	chr15:83544000-83551000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:83544000-83558000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr15:83544000-83558000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:83544000-83563800	Weak transcription	Brain Anterior Caudate	brain
27	chr15:83544200-83546400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:83544200-83549000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:83544200-83549200	Weak transcription	Liver	Liver
30	chr15:83544200-83557800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:83544200-83560800	Weak transcription	Primary T cells from cord blood	blood
32	chr15:83544400-83551000	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:83544600-83550400	Weak transcription	HSMMtube	muscle
34	chr15:83544800-83546400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:83544800-83559400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:83545000-83546000	Weak transcription	Pancreas	Pancrea
37	chr15:83545000-83546400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:83545000-83551800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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