Variant report

Variant	rs750234
Chromosome Location	chr15:83577693-83577694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1021022	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12385947	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1256424	0.88[ASW][hapmap];0.85[CEU][hapmap];0.90[MKK][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs1256426	0.84[YRI][hapmap]
rs1256428	0.85[GIH][hapmap];0.84[JPT][hapmap]
rs1256436	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1256438	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256439	0.88[CEU][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256440	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256441	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256442	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256443	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256444	0.82[CEU][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256445	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1256446	0.82[ASW][hapmap];0.89[CEU][hapmap];0.85[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1256447	0.89[CEU][hapmap];0.80[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1256448	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1256449	0.82[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1256450	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1256454	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17294229	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2251275	0.82[ASW][hapmap];0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2621226	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2667377	0.88[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap]
rs2667378	0.88[CEU][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2667379	0.89[CEU][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2667380	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2667384	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3784377	0.85[MKK][hapmap];0.94[YRI][hapmap]
rs55633961	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6603035	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7173264	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7173683	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8031927	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8036957	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs880289	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs899746	0.85[MKK][hapmap];0.94[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs750234	RASGRF1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83568200-83585400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:83570400-83591600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:83573600-83582000	Weak transcription	Psoas Muscle	Psoas
4	chr15:83574800-83579400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:83577000-83578400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:83577600-83577800	ZNF genes & repeats	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links