Variant report

Variant	rs17353206
Chromosome Location	chr11:9829323-9829324
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11042488	1.00[ASN][1000 genomes]
rs11042496	1.00[ASN][1000 genomes]
rs11042511	0.95[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420712	1.00[ASN][1000 genomes]
rs12807967	1.00[ASN][1000 genomes]
rs12808226	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17268632	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910065	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910071	0.85[CEU][hapmap]
rs4910505	1.00[ASN][1000 genomes]
rs61876907	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7943610	0.85[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9809600-9832600	Weak transcription	Colonic Mucosa	Colon
2	chr11:9812200-9862200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
4	chr11:9821800-9830000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:9824200-9837200	Weak transcription	Hela-S3	cervix
6	chr11:9824200-9867600	Weak transcription	Psoas Muscle	Psoas
7	chr11:9824400-9831800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:9824400-9841400	Weak transcription	Fetal Heart	heart
9	chr11:9824800-9831400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:9824800-9834400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:9825400-9838600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:9825800-9829400	Weak transcription	HMEC	breast
13	chr11:9825800-9837400	Weak transcription	NH-A	brain
14	chr11:9825800-9837800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:9825800-9841600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:9826400-9830800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:9826600-9829600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:9826600-9830200	Strong transcription	NHDF-Ad	bronchial
19	chr11:9826600-9830800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:9826800-9830200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:9826800-9830600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:9826800-9830800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:9826800-9868200	Weak transcription	Aorta	Aorta
24	chr11:9827000-9829800	Strong transcription	Osteobl	bone
25	chr11:9827000-9830200	Strong transcription	A549	lung
26	chr11:9827000-9830400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr11:9827000-9830800	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:9827200-9830600	Strong transcription	Ovary	ovary
29	chr11:9827400-9830600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:9827600-9829600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:9827600-9829600	Strong transcription	Brain Angular Gyrus	brain
32	chr11:9827600-9829800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:9827800-9829400	Strong transcription	Liver	Liver
34	chr11:9827800-9829600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:9827800-9829600	Strong transcription	Fetal Thymus	thymus
36	chr11:9827800-9830800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:9827800-9830800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr11:9828000-9829800	Strong transcription	Primary hematopoietic stem cells	blood
39	chr11:9828000-9830000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:9828000-9830200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:9828000-9830400	Strong transcription	Primary B cells from cord blood	blood
42	chr11:9828000-9830600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:9828000-9830600	Strong transcription	Adipose Nuclei	Adipose
44	chr11:9828200-9830400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:9828400-9829600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:9828400-9830000	Strong transcription	Primary T cells from cord blood	blood
47	chr11:9828400-9830000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:9828400-9830200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:9828400-9830200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:9828400-9830200	Strong transcription	HUES48 Cell Line	embryonic stem cell

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