Variant report

Variant	rs17359381
Chromosome Location	chr4:175393673-175393674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10520284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10520285	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17060524	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17060532	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17060537	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17060547	0.84[EUR][1000 genomes]
rs17060557	0.84[EUR][1000 genomes]
rs17358909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17360116	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs45445797	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs45446798	0.84[EUR][1000 genomes]
rs45471401	0.84[EUR][1000 genomes]
rs45498507	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4613543	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175393000-175395800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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