Variant report

Variant	rs17419441
Chromosome Location	chr7:15663449-15663450
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10486764	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10486769	0.82[AMR][1000 genomes]
rs12534708	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12536797	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12539017	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17168843	0.82[EUR][1000 genomes]
rs17168857	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17168874	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17168900	0.82[AMR][1000 genomes]
rs17168926	0.82[AMR][1000 genomes]
rs17390707	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2389535	0.80[EUR][1000 genomes]
rs55805950	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55989352	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56108052	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv1018250	chr7:15648861-15667882	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:15645400-15668200	Weak transcription	Right Ventricle	heart
3	chr7:15647800-15668000	Weak transcription	Fetal Stomach	stomach
4	chr7:15648000-15664000	Weak transcription	Osteobl	bone
5	chr7:15652000-15683400	Weak transcription	Adipose Nuclei	Adipose
6	chr7:15657400-15673000	Weak transcription	Psoas Muscle	Psoas
7	chr7:15660400-15664800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:15660800-15668200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:15661200-15664000	Weak transcription	NHDF-Ad	bronchial
10	chr7:15661400-15664000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:15661400-15665200	Weak transcription	HUVEC	blood vessel
12	chr7:15661400-15668000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:15662400-15664400	Strong transcription	Fetal Muscle Leg	muscle
14	chr7:15662800-15664000	Weak transcription	Fetal Lung	lung
15	chr7:15662800-15664000	Strong transcription	Left Ventricle	heart
16	chr7:15663400-15666400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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