Variant report

Variant	rs12539017
Chromosome Location	chr7:15619405-15619406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:15583030..15584744-chr7:15618985..15621103,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10486764	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486768	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10486769	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12534708	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536797	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878569	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168843	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168857	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17168874	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17168897	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168900	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17168904	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168905	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168907	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168924	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168926	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168927	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168933	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17390707	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17419441	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17420659	0.87[AMR][1000 genomes]
rs2282933	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2389535	0.84[EUR][1000 genomes]
rs55653754	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55805950	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55989352	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56108052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv606297	chr7:15582208-15621650	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv606298	chr7:15598156-15621650	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606299	chr7:15603853-15637887	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15618200-15621200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:15619000-15620400	Enhancers	Liver	Liver

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