Variant report

Variant	rs17168927
Chromosome Location	chr7:15668737-15668738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10486764	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10486768	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486769	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534708	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12536797	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12539017	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16878569	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168843	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168857	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168874	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168897	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17168904	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168905	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168907	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168924	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168926	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168933	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17420659	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2282933	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55653754	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55805950	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55989352	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56108052	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60809808	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15652000-15683400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:15657400-15673000	Weak transcription	Psoas Muscle	Psoas
3	chr7:15666600-15682600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:15667800-15669600	Enhancers	Osteobl	bone
5	chr7:15667800-15670000	Enhancers	NHDF-Ad	bronchial
6	chr7:15668000-15669200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:15668000-15669200	Enhancers	Fetal Stomach	stomach
8	chr7:15668000-15669400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:15668000-15670600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:15668200-15668800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:15668200-15668800	Enhancers	NHLF	lung
12	chr7:15668200-15669200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:15668200-15669200	Enhancers	NH-A	brain
14	chr7:15668200-15669600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:15668400-15668800	Bivalent Enhancer	Fetal Lung	lung
16	chr7:15668400-15669200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:15668400-15677000	Weak transcription	Left Ventricle	heart
18	chr7:15668600-15676200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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