Variant report

Variant	rs17168857
Chromosome Location	chr7:15634235-15634236
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10486764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486768	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10486769	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12534708	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12536797	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12539017	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16878569	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168843	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17168874	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168897	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168900	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17168904	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168905	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168907	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168924	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168926	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168927	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17168933	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17390707	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17419441	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17420659	0.87[AMR][1000 genomes]
rs2282933	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2389535	0.86[EUR][1000 genomes]
rs55653754	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55805950	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55989352	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56108052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv606299	chr7:15603853-15637887	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
5	nsv606300	chr7:15630754-15637713	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv606301	chr7:15630871-15636977	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv606302	chr7:15630871-15637005	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv606303	chr7:15630871-15637403	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv606304	chr7:15630871-15637565	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15630200-15648800	Weak transcription	Fetal Lung	lung
2	chr7:15634200-15634800	Enhancers	Placenta Amnion	Placenta Amnion

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