Variant report

Variant	rs55653754
Chromosome Location	chr7:15650233-15650234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10486764	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10486768	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486769	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12534708	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12536797	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12539017	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16878569	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17168843	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168857	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168874	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168900	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17168904	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168905	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168907	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168924	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168926	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168927	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17168933	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17420659	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2282933	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55805950	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55989352	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56108052	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60809808	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv464392	chr7:15642053-15654614	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv606310	chr7:15642053-15654614	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
6	nsv1018250	chr7:15648861-15667882	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15640000-15651200	Weak transcription	Adipose Nuclei	Adipose
2	chr7:15640000-15662400	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:15645400-15668200	Weak transcription	Right Ventricle	heart
5	chr7:15647600-15662400	Weak transcription	Left Ventricle	heart
6	chr7:15647800-15668000	Weak transcription	Fetal Stomach	stomach
7	chr7:15648000-15659800	Weak transcription	NHDF-Ad	bronchial
8	chr7:15648000-15664000	Weak transcription	Osteobl	bone
9	chr7:15648800-15652400	Strong transcription	Fetal Lung	lung
10	chr7:15649000-15651600	Weak transcription	A549	lung

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