Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12211136	0.86[ASN][1000 genomes]
rs1540939	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540940	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540941	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623002	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1743931	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1743933	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1743935	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1763514	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1763517	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1763518	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1763531	0.86[ASN][1000 genomes]
rs2027175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2181171	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2811690	0.86[ASN][1000 genomes]
rs2811691	0.86[ASN][1000 genomes]
rs2811693	0.85[ASN][1000 genomes]
rs34441352	0.86[ASN][1000 genomes]
rs4318899	0.86[ASN][1000 genomes]
rs4645436	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134472600-134474400	Enhancers	Fetal Intestine Small	intestine
2	chr6:134473600-134474800	Enhancers	Fetal Heart	heart
3	chr6:134473800-134474400	Enhancers	Gastric	stomach
4	chr6:134473800-134474600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:134473800-134474600	Enhancers	Fetal Kidney	kidney
6	chr6:134473800-134474600	Enhancers	Ovary	ovary
7	chr6:134473800-134475000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:134473800-134475400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:134474000-134474400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:134474000-134474400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:134474000-134474400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:134474000-134474400	Enhancers	Fetal Intestine Large	intestine
13	chr6:134474000-134474400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr6:134474000-134474600	Enhancers	Left Ventricle	heart
15	chr6:134474200-134474400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:134474200-134474600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:134474200-134474600	Enhancers	Pancreas	Pancrea
18	chr6:134474200-134474600	Enhancers	Right Ventricle	heart

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