Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12211136	0.90[ASN][1000 genomes]
rs1540939	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1540940	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1540941	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1623002	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1743931	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1743932	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1743935	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1763514	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1763517	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1763518	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1763531	0.90[ASN][1000 genomes]
rs2027175	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2181171	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2758145	0.85[EUR][1000 genomes]
rs2811690	0.90[ASN][1000 genomes]
rs2811691	0.90[ASN][1000 genomes]
rs2811693	0.89[ASN][1000 genomes]
rs34441352	0.90[ASN][1000 genomes]
rs4318899	0.90[ASN][1000 genomes]
rs4645436	0.90[ASN][1000 genomes]
rs6927548	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134472600-134474400	Enhancers	Fetal Intestine Small	intestine
2	chr6:134473000-134474000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:134473200-134474000	Weak transcription	Fetal Intestine Large	intestine

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