Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12211136	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540939	0.86[ASN][1000 genomes]
rs1540940	0.86[ASN][1000 genomes]
rs1540941	0.86[ASN][1000 genomes]
rs1623002	0.83[ASN][1000 genomes]
rs1743932	0.86[ASN][1000 genomes]
rs1743933	0.90[ASN][1000 genomes]
rs1743935	0.95[ASN][1000 genomes]
rs1763514	0.95[ASN][1000 genomes]
rs1763517	0.90[ASN][1000 genomes]
rs1763518	0.86[ASN][1000 genomes]
rs1763531	1.00[ASN][1000 genomes]
rs2027175	0.83[ASN][1000 genomes]
rs2181171	0.86[ASN][1000 genomes]
rs2811690	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811691	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811693	0.99[ASN][1000 genomes]
rs34441352	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645436	1.00[ASN][1000 genomes]
rs6927548	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134460200-134468400	Weak transcription	HSMMtube	muscle
2	chr6:134466400-134466800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:134466400-134467800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:134466400-134468000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: