Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:134470302..134473114-chr6:134476230..134478475,2	K562	blood:
2	chr6:134476543..134479097-chr6:134494526..134496856,2	K562	blood:
3	chr6:134476676..134478373-chr6:135143716..135146173,2	K562	blood:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12211136	0.86[ASN][1000 genomes]
rs1540939	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540940	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540941	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623002	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1743931	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1743932	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1743933	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1743935	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1763514	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1763517	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1763518	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1763531	0.86[ASN][1000 genomes]
rs2027175	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2758145	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2811690	0.86[ASN][1000 genomes]
rs2811691	0.86[ASN][1000 genomes]
rs2811693	0.85[ASN][1000 genomes]
rs34441352	0.86[ASN][1000 genomes]
rs4318899	0.86[ASN][1000 genomes]
rs4645436	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv348798	chr6:134475504-134485232	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134476800-134495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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