Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11930784	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1385056	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap]
rs17003695	1.00[ASN][1000 genomes]
rs17003697	1.00[ASN][1000 genomes]
rs17441194	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17441480	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4302482	0.88[JPT][hapmap]
rs58384464	0.85[AFR][1000 genomes]
rs58914185	0.85[AFR][1000 genomes]
rs59342806	0.85[AFR][1000 genomes]
rs59735955	1.00[AFR][1000 genomes]
rs72869043	0.85[AFR][1000 genomes]
rs72869051	0.85[AFR][1000 genomes]
rs72869057	0.85[AFR][1000 genomes]
rs72869067	0.85[AFR][1000 genomes]
rs72870805	0.85[AFR][1000 genomes]
rs72870831	0.85[AFR][1000 genomes]
rs72870849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870863	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870900	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72872309	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72872313	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72872315	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80209600-80216600	Weak transcription	Fetal Heart	heart
2	chr4:80211600-80216400	Weak transcription	Fetal Brain Female	brain
3	chr4:80212000-80216400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:80213600-80215600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:80215000-80215600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:80215000-80215600	Enhancers	HepG2	liver
7	chr4:80215000-80219200	Weak transcription	Adipose Nuclei	Adipose
8	chr4:80215400-80215600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:80215400-80238600	Weak transcription	K562	blood

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