Variant report

Variant	rs17465113
Chromosome Location	chr5:124734492-124734493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs62374669	0.81[EUR][1000 genomes]
rs62374670	0.81[EUR][1000 genomes]
rs62374671	0.83[EUR][1000 genomes]
rs62374673	0.83[EUR][1000 genomes]
rs62374685	0.83[EUR][1000 genomes]
rs62374686	0.83[EUR][1000 genomes]
rs62374687	0.83[EUR][1000 genomes]
rs62374698	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374716	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374723	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374727	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374730	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374731	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124731000-124740800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124733400-124734600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:124734200-124739400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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