Variant report

Variant	rs17488814
Chromosome Location	chr4:166283914-166283915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10049752	0.80[AMR][1000 genomes]
rs10517833	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs11726415	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11729568	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730543	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11944540	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1530043	1.00[CHB][hapmap]
rs17046216	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488289	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17488436	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17488534	1.00[CHB][hapmap];0.86[MEX][hapmap];0.89[ASN][1000 genomes]
rs17488569	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488835	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17488877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585396	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs17585550	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs1818471	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1986031	0.89[ASN][1000 genomes]
rs28678592	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs36230153	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3901486	0.89[ASN][1000 genomes]
rs4353858	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4588420	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs55648903	0.89[ASN][1000 genomes]
rs55650232	0.89[ASN][1000 genomes]
rs56022310	0.89[ASN][1000 genomes]
rs56058696	0.89[ASN][1000 genomes]
rs56104713	0.89[ASN][1000 genomes]
rs56144732	0.89[ASN][1000 genomes]
rs56287687	0.89[ASN][1000 genomes]
rs56326646	0.89[ASN][1000 genomes]
rs56370618	0.89[ASN][1000 genomes]
rs56387271	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56407727	0.89[ASN][1000 genomes]
rs56410965	0.89[ASN][1000 genomes]
rs57162477	0.89[ASN][1000 genomes]
rs58426709	0.89[ASN][1000 genomes]
rs6829944	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6830103	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6831119	0.89[ASN][1000 genomes]
rs6853219	0.89[ASN][1000 genomes]
rs72699595	0.89[ASN][1000 genomes]
rs72699598	0.89[ASN][1000 genomes]
rs72701606	0.89[ASN][1000 genomes]
rs72701608	0.89[ASN][1000 genomes]
rs72701623	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701624	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701625	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72701638	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701640	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701663	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166285400	Weak transcription	HepG2	liver
2	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:166281600-166285400	Weak transcription	HMEC	breast
4	chr4:166281600-166285800	Weak transcription	Hela-S3	cervix
5	chr4:166281800-166284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:166282600-166290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:166282800-166286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:166283600-166288600	Enhancers	Fetal Intestine Large	intestine

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